Leadership Teachers in Computer Laboratory

Educator Workshops

We offer up-to-date teacher training through biology workshops and development for teachers in genetics and biotechnology. With funding from the National Science Foundation we offer these free workshops to high school and college educators, especially those in the areas of genetics, biology, genomics, and bioinformatics.

Check back frequently; additional workshops are listed as they are scheduled.

MaizeCODE logogramene logo

... for PUI Faculty

Maize Annotation Jamborees 2019

The NSF-funded MaizeCODE and Gramene projects invite PUI faculty to apply to participate in two maize genome annotation jamborees.

before Plant and Animal Genome Conference at San Diego, CA, January 10–11, 2019
before Plant Biology Meeting at San Jose, CA, August 2–3, 2019

Maize is the most important crop in the world. Its genome sequence is the foundational resource for improving yield and adapting maize to environmental and biological challenges. Even though the fourth-generation maize genome assembly is supported by abundant RNA-based evidence, many gene models still need to be examined and corrected by a human being – that is, hand annotated! The NSF-funded MaizeCODE and Gramene projects have developed a system to identify genes in need of curation. Our objective is to train faculty to use simple genome annotation tools and to lead maize annotation projects as course-based undergraduate research experiences (CUREs). In this way, students can contribute to the improvement of the maize genome. At the same time, gene annotation is the best way for students to learn about gene and genome structure and function.

We invite you to apply to participate in one of our maize 2019 genome annotation jamborees held in conjunction with major scientific meetings. At the workshop you will work in teams to learn how to annotate a set of target genes. Then you will return to your institution with a list of genes to annotate with students. Twice-monthly webinars will provide support, allow students to share results, and seek consensus on difficult gene models. Reagents will be provided for students to amplify target genes from available c-DNA libraries, then develop sequence to validate difficult gene models.

Candidates should be undergraduate teaching faculty with sincere desire to involve students in authentic research projects and to contribute to the improvement of the maize reference genome. Basic bioinformatics skills, familiarity with genome annotation and databases (such as Gramene and MaizeGDB), or in-depth knowledge of maize biology is desirable. Scholarships of up to $1,000 are available toward travel, room, and board. Each Jamboree will take place prior to a major scientific meeting. You are encouraged to attend or present at the coordinating scientific meeting, which may also improve chances of obtaining support from your own institution.

Space is limited to 10 participants per Jamboree, and applications will be reviewed as received. Although meeting attendance is optional, candidates who plan to attend PAG will be notified of decisions before the deadlines for abstract submission (October 26) and early registration (November 2). We look forward to seeing you in San Diego or San Jose!

Best regards,
Doreen Ware, Ph.D.
Marcela Karey Tello-Ruiz, Ph.D. [telloruiz@cshl.edu]

Dave Micklos, D.Sc.
Cristina Fernandez-Marco, Ph.D. [marco@cshl.edu]

Cold Spring Harbor Laboratory
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